docs: product-facing README; archive CST theory notes (0.9.34)
Rewrite the homepage for day-to-day use, move paper/eval drafts under docs/archive, and add a docs index so theory no longer leads the project. Co-authored-by: Cursor <cursoragent@cursor.com>
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# [--model M] [--max-steps N] [--tools minimal|default] [--out DIR]
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# [--record] [--baseline-only]
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#
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# --tools defaults to minimal (the four tools the paper experiments used).
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# --tools defaults to minimal (read_file / run_shell / write_file / apply_patch).
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#
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# Artifacts go to <out>/<fixture>__<protocol>__<model>__<stamp>/:
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# result.json agent.log session.jsonl metrics.jsonl check.log [sse/]
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